TOP publications in 2023

List of D1 publications sorted by research labs:

 

 

Advanced Data Analysis and Simulations Lab

 

  • Vavra O., Beránek J., Stourac J., Šurkovský M., Filipovic J., Damborsky J., Martinovič J., Bednar D.: pyCaverDock: Python implementation of the popular tool for analysis of ligand transport with advanced caching and batch calculation support. Bioinformatics, 2023.
    DOI 10.1093/bioinformatics/btad443. (D1, IF 5.8)
  • Lampart M., Zapoměl J.: The disturbance influence on vibration of a belt device driven by a crank mechanism. Chaos, Solitons & Fractals, 2023. DOI 10.1016/j.chaos.2023.113634. (D1, IF 7.8)
  • Maška M., Ulman V., Delgado-Rodriguez P., Gómez-de-Mariscal E., Nečasová T., Guerrero Peña Fidel A., Ren Tsang Ing, Meyerowitz Elliot M., Scherr T., Löffler K., Mikut R., Guo T., Wang Y., Allebach Jan P., Bao R., Al-Shakarji Noor M., Rahmon G., Toubal Imad E., Palaniappan K., Lux F., Matula P., Sugawara K., Magnusson Klass E.G., Aho L., Cohen Andrew R., Arbelle A., Ben-Haim T., Raviv Tammy R., Isensee F., Jäger Paul F., Maier-Hein Klaus H., Yanming Z., Ederra C., Urbiola A., Meijering E., Cunha A., Muñoz-Barrutia A., Kozubek M., Ortiz-de-Solórzano C.:
    The Cell Tracking Challenge: 10 years of objective benchmarking. Nature Methods, 2023. DOI 10.1038/s41592-023-01879-y. (D1, IF 48)
  • Klein L., Fulneček J., Seidl D., Prokop L., Mišák S., Dvorský J., Piecha M.: A Data Set of Signals from an Antenna for Detection of Partial Discharges in Overhead Insulated Power Line. Scientific data, 2023. DOI 10.1038/s41597-023-02451-1. (D1, IF 9.8)
  • Lampart M., Lampartová A., Orlando G.: On risk and market sentiments driving financial share price dynamics. Nonlinear Dynamics, 2023. DOI 10.1007/s11071-023-08702-5. (D1, IF 5.6)
  • Klein L., Seidl D., Fulneček J., Prokop L., Mišák S., Dvorský J.: Antenna contactless partial discharges detection in covered conductors using ensemble stacking neural networks. Expert Systems with Applications, 2023. DOI 10.1016/j.eswa.2022.118910. (D1, IF 8.5)
  • Zelinka I., Kojecký L., Lampart M., Nowaková J., Plucar J.: iSOMA swarm intelligence algorithm in synthesis of quantum computing circuits. Applied Soft Computing, 2023. DOI 10.1016/j.asoc.2023.110350. (D1, IF 8.5)
  • Riaz M. B., Jhangeer A., Martinovič J., Kazmi Syeda S.: Dynamics and Soliton Propagation in a Modified Oskolkov Equation: Phase Plot Insights. Symmetry, 2023. DOI 10.3390/sym15122171. (D1, IF 2.7)
  • Halfar Radek, Lawson B.A.J.: Weber dos Santos Rodrigo ; Burrage K.: Recurrence quantification analysis for fine-scale characterisation
    of arrhythmic patterns in cardiac tissue    . Scientific Reports, 2023. DOI 10.1038/s41598-023-38256-w. (D1, IF 4.6)
  • Topolánek D., Krčál V., Foltyn L., Praks P., Vysocký J., Praksová R., Prettico G., Fulli G.: Optimization method for short circuit current reduction in extensive meshed LV network. International Journal of Electrical Power & Energy Systems, 2023. DOI 10.1016/j.ijepes.2023.109203. (D1, IF 5.2)
  • Zahra A., Mardan S. A., Riaz M. B.: Conformal motion for higher-dimensional compact objects. European Physical Journal C, 2023. DOI 10.1140/epjc/s10052-023-12289-x. (D1, IF 4.4)
  • Riaz M. B., Naseer F., Abbas M., Abd El-Rahman M., Nazir T., Chan Choon K.: Solitary wave solutions of Sawada-Kotera equation using two efficient analytical methods. AIMS Mathematics, 2023. DOI 10.3934/math.20231601. (D1, IF 3.5)
  • Marchamalo-Sacristán M., Ruiz-Armenteros A.M., Lamas-Fernández F., González-Rodrigo B., Martínez-Marín R., Delgado-Blasco J.M., Bakon M., Lazecký M., Perissin D., Papco J., Sousa J.J.: MT-InSAR and Dam Modeling for the Comprehensive Monitoring of an Earth-Fill Dam: The Case of the Benínar Dam (Almería, Spain). Remote Sensing, 2023. DOI 10.3390/rs15112802. (D1, IF 5)
     

 

 

Infrastructure Research Lab

 

  • Singh U., Maca P., Hanel M., Markonis Y., Nidamanuri Rama R., Nasreen S., Blocher Johanna R., Strnad F., Vorel J., Říha L., Raghubanshi Akhilesh S.: Hybrid multi-model ensemble learning for reconstructing gridded runoff of Europe for 500 years. Information Fusion, 2023. DOI 10.1016/j.inffus.2023.101807. (D1, IF 18.6)
  • Civiš S., Lamanec Maximilián, Špirko V., Kubišta J., Špeťko M., Hobza P.: Hydrogen Bonding with Hydridic Hydrogen-Experimental
    Low-Temperature IR and Computational Study: Is a Revised Definition of Hydrogen Bonding Appropriate?     Journal of the American Chemical Society, 2023. DOI 10.1021/jacs.3c00802. (D1, IF 15)
  • Dostál Z., Brzobohatý T., Vlach O., Meca O., Sadowská M.: Hybrid TFETI domain decomposition with the clusters joined by faces' rigid modes for solving huge 3D elastic problems. Computational Mechanics, 2023. DOI 10.1007/s00466-022-02242-2. (D1, IF 4.1)
     

 

 

Parallel Algorithms Research Lab

  • Dostál Z., Brzobohatý T., Vlach O., Meca O., Sadowská M.: Hybrid TFETI domain decomposition with the clusters joined by faces' rigid modes for solving huge 3D elastic problems. Computational Mechanics, 2023. DOI 10.1007/s00466-022-02242-2 . (D1, IF 4.1)
  • Gebauer M., Blejchař T., Brzobohatý T., Nevřela M.: Conjugate Heat Transfer Model for an Induction Motor and Its Adequate FEM Model. Symmetry, 2023. DOI 10.3390/sym15071294. (D1, IF 2.7)
     

 

 

Modelling for Nanotechnologies Lab

 

  • Hemmat M., Ayari S., Mičica M., Vergnet H., Guo S., Arfaoui M., Yu X., Vala D., Wright A., Postava K., Mangeney J., Carosella F., Jaziri S., Wang QJ., Zheng L., Tignon J., Ferreira R., Baudin E., Dhillon S.: Layer-controlled nonlinear terahertz valleytronics in two-dimensional semimetal and semiconductor PtSe2. Infomat, 2023. DOI 10.1002/inf2.12468. (D1, IF 22.7)
  • Havela L., Legut D., Kolorenc J.: Hydrogen in actinides: electronic and lattice properties. Reports on Progress in Physics, 2023.
    DOI 10.1088/1361-6633/acbe50. (D1, IF 18.1)
  • Civiš S., Lamanec M., Špirko V., Kubišta J., Špeťko M., Hobza P.: Hydrogen Bonding with Hydridic Hydrogen-Experimental Low-Temperature IR and Computational Study: Is a Revised Definition of Hydrogen Bonding Appropriate? Journal of the American Chemical Society, 2023. DOI 10.1021/jacs.3c00802. (D1, IF 15)
  • Deshmukh S., Ghosh K., Pykal M., Otyepka M., Pumera M.: Laser-Induced MXene-Functionalized Graphene Nanoarchitectonics-Based Microsupercapacitor for Health Monitoring Application. ACS Nano, 2023. DOI 10.1021/acsnano.3c07319. (D1, IF 17.1)
  • Zhang Y., Liu ZR., Yao BN., Legut D., Zhang RF.: Atomic insights into interface-mediated plasticity and engineering principles for heterogeneous serrated interfaces. International Journal of Plasticity, 2023. DOI 10.1016/j.ijplas.2022.103498. (D1, IF 9.8)
  • Portniagin Arsenii S., Sergeeva Kseniia A., Kershaw Stephen V., Rogatch A.: Cation-Exchange-Derived Wurtzite HgTe Nanorods
    for Sensitive Photodetection in the Short-Wavelength Infrared Range    . Chemistry of Materials, 2023. DOI 10.1021/acs.chemmater.3c01144. (D1, IF 8.6)
  • Lawson R., Čechová P., Zarrouk E., Javellaud J., Bazgier V., Otyepka M., Trouillas P., Picard N., Marquet P., Saint-Marcoux F., El Balkhi S.: Metabolic interactions of benzodiazepines with oxycodone ex vivo and toxicity depending on usage patterns in an animal model. British Journal of Pharmacology, 2023. DOI 10.1111/bph.15765. (D1, IF 7.3)
  • Poulose Aby Ch., Medved M., Bakuru Vasudeva R., Sharma A., Singh D., Kalidindi Suresh B., Bares H., Otyepka M., Jayaramulu K., Bakandritsos A., Zbořil R.: Acidic graphene organocatalyst for the superior transformation of wastes into high-added-value chemicals. Nature Communications, 2023. DOI 10.1038/s41467-023-36602-0. (D1, IF 3.24)
  • Lesňák M., Cvejn D., Petr M., Peikertová P., Gabor R., Fördös T., Czernek P., Plachá D.: A Novel N-doped Carbon Nanomaterial – Carbon NanoMousse. Journal of Materials Chemistry A, 2023. DOI 10.1039/d2ta07947j. (D1, IF 11.9)
  • Yang Q., Nguyen Emily P., Panacek D., Sedajova V., Hruby V., Rosati G., Silva Cecilia de Carvalho C., Bakandritsos A., Otyepka M., Merkoci A.: Metal-free cysteamine-functionalized graphene alleviates mutual interferences in heavy metal electrochemical detection. Green Chemistry, 2023. DOI 10.1039/d2gc02978b. (D1, IF 9.8)
  • Mlynsky V., Kuhrova P., Stadlbauer P., Krepl M., Otyepka M., Banáš P., Sponer J.: Simple Adjustment of Intranucleotide Base-Phosphate Interaction in the OL3 AMBER Force Field Improves RNA Simulations. Journal of Chemical Theory and Computation, 2023. DOI 10.1021/acs.jctc.3c00990. (D1, IF 5.5)
  • Stadlbauer P., Mlýnský V., Krepl M., Šponer J.: Complexity of Guanine Quadruplex Unfolding Pathways Revealed by Atomistic Pulling Simulations. Journal of Chemical Information and Modeling, 2023. DOI 10.1021/acs.jcim.3c00171. (D1, IF 5.6)
  • Shick A.B, Halevy I., Tchaplianka M., Legut D.: Itinerant-localized dichotomy in magnetic anisotropic properties of U-based ferromagnets. Scientific Reports, 2023. DOI 10.1038/s41598-023-29823-2. (D1, IF 4.6)
  • Kadam Ravishankar G., Medved M., Kumar S., Zaoralová D., Zoppellaro G., Baďura Z., Montini T., Bakandritsos A., Fonda E., Tomanec O., Otyepka M., Varma Rajender S., Gawande Manoj B., Fornasiero P., Zbořil R.: Linear-Structure Single-Atom Gold(I) Catalyst for Dehydrogenative Coupling of Organosilanes with Alcohols. ACS Catalysis, 2023. DOI 10.1021/acscatal.3c03937. (D1, IF 12.9)
  • Zdrazil L., Panacek D., Sedajova V., Badura Z., Langer M., Medved M., Paloncyova M., Scheibe M., Kalytchuk S., Zoppellaro G., Kment Š., Cadranel A., Bakandritsos A., Guldi Dirk M., Otyepka M. Zbořil R.: Carbon Dots Enabling Parts-Per-Billion Sensitive and Ultraselective Photoluminescence Lifetime-Based Sensing of Inorganic Mercury. Advanced Optical Materials, 2023. DOI 10.1002/adom.202300750. (D1, IF 9)
  • Padinjareveetil A.K.K., Perales-Rondon J.V., Zaoralová D., Otyepka M., Alduhaish O.; Pumera M.: Fe-MOF Catalytic Nanoarchitectonic toward Electrochemical Ammonia Production. ACS applied materials & interfaces, 2023. DOI 10.1021/acsami.3c12822. (D1, IF 9.5)
  • Vacek J., Zatloukalova M., Bartheldyova E., Řeha D., Minofar B., Bednarova K., Renciuk D., Coufal J., Fojta M., Zadny J., Gessini A., Rossi B., Storch J., Kabelac M.: Hexahelicene DNA-binding: Minor groove selectivity, semi-intercalation and chiral recognition. International Journal of Biological Macromolecules, 2023. DOI 10.1016/j.ijbiomac.2023.125905. (D1, IF 8.2)
  • Medveď M., Di Donato M., Buma Wybren J., Laurent Adele D., Lameijer L., Hrivnák T., Romanov I., Tran S., Feringa Ben L., Szymanski W., Woolley A.: Mechanistic Basis for Red Light Switching of Azonium Ions. Journal of the American Chemical Society, 2023. DOI 10.1021/jacs.3c06157. (D1, IF 15)
  • Wang S., Huang Z., Tang B., Li X., Zhao X., Chen Z., Zhi C., Rogatch A.: Conversion-Type Organic-Inorganic Tin-Based Perovskite Cathodes for Durable Aqueous Zinc-Iodine Batteries. Advanced Energy Materials, 2023. DOI 10.1002/aenm.202300922. (D1, IF 27.8)
  • Flauzino Jose M. R., Nalepa Martin-Alex, Chronopoulos Demetrios D., Sedajova V., Panacek D., Jakubec P., Kuhrova P., Pykal M., Banas P., Panacek A., Bakandritsos A., Otyepka M.: Click and Detect: Versatile Ampicillin Aptasensor Enabled by Click Chemistry on a Graphene-Alkyne Derivative. Small, 2023. DOI 10.1002/smll.202207216. (D1, IF 13.3)
  • Mallada B., Ondráček M., Lamanec M., Gallardo A., Jiménez-Martín A., de la Torre B., Hobza P.; Jelínek P.: Visualization of π-hole in molecules by means of Kelvin probe force microscopy. Nature Communications, 2023. DOI 10.1038/s41467-023-40593-3. (D1, IF 16.6)
  • Zhang Z., Sponer J., Bussi G., Mlýnský V., Sulc P., Simmons Chad R., Stephanopoulos N., Krepl M.: Atomistic Picture of Opening-Closing Dynamics of DNA Holliday Junction Obtained by Molecular Simulations. Journal of Chemical Information and Modeling, 2023. DOI 10.1021/acs.jcim.3c00358. (D1, IF 5.6)
  • Hu Sile, Tang Bing, Kershaw Stephen V., Rogatch A.: Metal Halide Perovskite Photo-Field-Effect Transistors with Chiral Selectivity.  ACS applied materials & interfaces, 2023. DOI 10.1021/acsami.3c03201. (D1, IF 9.5)
  • Zhang X., Zhang Y., Guo J., Lu M., Sun S., Han C., Yang X., Kershaw Stephen V., Zheng W., Rogatch A.: Highly Stable and Efficient Light-Emitting Diodes Based on Orthorhombic.-CsPbI3 Nanocrystals. ACS Nano, 2023. DOI 10.1021/acsnano.3c00789. (D1, IF 17.1)
  • Veverka J., Vilémová M., Lukáč F., Kadzielawa A. P., Legut D.; Vontorová J., Kozlík J., Chráska T.: Decreasing the W-Cr solid solution decomposition rate: Theory, modelling and experimental verification. Journal of Nuclear Materials, 2023. DOI 10.1016/j.jnucmat.2023.154288. (D1, IF 3.1)
  • More-Chevalier J., Wdowik U. D., Legut D., Cichoň S., de Prado E., Gregora I., Bulíř J., Novotný M., Fekete L., Lančok J.: Effect of oxygen defects on microstructure, optical and vibrational properties of ScN films deposited on MgO substrate from experiment and first principles. Applied Surface Science, 2023. DOI 10.1016/j.apsusc.2022.156203. (D1, IF 6.7)
  • Kuhrova P., Mlynsky V., Otyepka M., Sponer J., Banas P.: Sensitivity of the RNA Structure to Ion Conditions as Probed by Molecular Dynamics Simulations of Common Canonical RNA Duplexes. Journal of Chemical Information and Modeling, 2023. DOI 10.1021/acs.jcim.2c01438. (D1, IF 5.6)
  • Dědek I., Bartusek S., Dvořáček J.J., Nečas J., Petruš J., Jakubec P., Kupka V., Otyepka M.: Maximizing the electrochemical performance
    of supercapacitor electrodes from plastic waste    . Journal of Energy Storage, 2023. (D1, IF 9.4)
  • Kadam Ravishankar G., Ye Tian-Nan, Zaoralova D., Medved M., Sharma P., Lu Y., Zoppellaro G., Tomanec O., Otyepka M.,  Zbořil R., Hosono H., Gawande Manoj B.: Intermetallic Copper-Based Electride Catalyst with High Activity for C-H Oxidation and Cycloaddition of CO2 into Epoxides. Small, 2023. DOI 10.1002/smll.202307311. (D1, IF 13.3)
  • Zhang B., Wang B., Ushakova Elena V., He B., Xing G., Tang Z., Rogatch A., Qu S.: Assignment of Core and Surface States in Multicolor-Emissive Carbon Dots. Small, 2023. DOI 10.1002/smll.202204158. (D1, IF 13.3)
  • Langer M., Zdražil L., Medveď M., Otyepka M.: Communication of molecular fluorophores with other photoluminescence centres in carbon dots. Nanoscale, 2023. DOI 10.1039/d2nr05114a. (D1, IF 6.7)
  • Zdrazil L., Badura Z., Langer M., Kalytchuk S., Panacek D., Scheibe M., Kment Š., Kmentova H., Thottappali Muhammed A., Mohammadi E., Medved M., Bakandritsos A., Zoppellaro G., Zbořil R., Otyepka M.: Magnetic Polaron States in Photoluminescent Carbon Dots Enable Hydrogen Peroxide Photoproduction. Small, 2023. DOI 10.1002/smll.202206587. (D1, IF 13.3)
  • Lo R., Mašínová A., Lamanec M., Nachtigallová D., Hobza P.: The unusual stability of H-bonded complexes in solvent caused by greater solvation energy of complex compared to those of isolated fragments. Journal of Computational Chemistry, 2023. DOI 10.1002/jcc.26928. (D1, IF 3)
  • Sergeeva Kseniia A., Pavlov Dmitrii V., Seredin Albert A., Mitsai Eugeny V., Sergeev Aleksandr A., Modin Evgeny B., Sokolova Anastasiia V., Lau Tsz Ch., Baryshnikova Kseniia V., Petrov Mihail I., Kershaw Stephen V., Kuchmizhak Aleksandr A., Wong Kam S., Rogatch A.:
    Laser-Printed Plasmonic Metasurface Supporting Bound States in the Continuum Enhances and Shapes Infrared Spontaneous Emission of Coupled HgTe Quantum Dots. Advanced Functional Materials, 2023. DOI 10.1002/adfm.202307660. (D1, IF 19)
  • Yin W., Zhang X., Rogatch A., Zheng W.: Emitter structure design of near-infrared quantum dot light-emitting devices. Materials Today, 2023. DOI 10.1016/j.mattod.2023.06.004. (D1, IF 24.2)
     

 

 

Big Data Analysis Lab

 

  • Drungilas D., Kurmis M., Senulis A., Lukosius Z., Andziulis A., Januteniene J., Bogdevicius M., Jankunas V., Vozňák M.: Deep reinforcement learning based optimization of automated guided vehicle time and energy consumption in a container terminal. Alexandria Engineering Journal, 2023. DOI 10.1016/j.aej.2022.12.057. (D1, IF 6.8)
  • Zelinka I., Kojecký L., Lampart M., Nowaková J., Plucar J.: iSOMA swarm intelligence algorithm in synthesis of quantum computing circuits. Applied Soft Computing, 2023. DOI 10.1016/j.asoc.2023.110350. (D1, IF 8.7)
  • Zelinka I., Lara de Leon MA., Windsor LC., Lozi R.: Softcomputing in identification of the origin of Voynich manuscript by comparison
    with ancient dialects    . Applied Soft Computing, 2023. DOI 10.1016/j.asoc.2023.110217. (D1, IF 8.7)
  • Dutta T., Bhattacharyya S., Panigrahi BK., Zelinka I., Mrsić L.: Multi-level quantum inspired metaheuristics for automatic clustering
    of hyperspectral images    . Quantum Machine Intelligence, 2023. DOI 10.1007/s42484-023-00110-7. (D1, IF 4.8)
  • Fazio P., Mehić M., Vozňák M., de Rango F., Tropea M.: A novel predictive approach for mobility activeness in mobile wireless networks. Computer Networks, 2023. DOI 10.1016/j.comnet.2023.109689. (D1, IF 5.6)
  • Le Si P., Nguyen TN. Vozňák M., Nguyen TM., Hoang TM., Minh BV., Tran PT.: Improving the Capacity of NOMA Network Using Multiple Aerial Intelligent Reflecting Surfaces. IEEE Access, 2023. DOI 10.1109/ACCESS.2023.3319675 (D1, IF 3.9)
  • Minh BV., Le Anh T., Le Ch., Nguyen SQ. Phan V., Nguyen TN., Vozňák M.: Performance Prediction in UAV-Terrestrial Networks With Hardware Noise. IEEE Access, 2023. DOI 10.1109/ACCESS.2023.3325478. (D1, IF 3.9)
  • Nguyen TN., Minh BV., Pham TT., Le Anh T., Vozňák M.: Security-Reliability Analysis in CR-NOMA IoT Network Under I/Q Imbalance. IEEE Access, 2023. DOI 10.1109/ACCESS.2023.3327789. (D1, IF 3.9)
  • Vo DT., Van Chien T., Nguyen TN., Tran D., Vozňák M., Kim BS., Tu LT.: SWIPT-Enabled Cooperative Wireless IoT Networks With Friendly Jammer and Eavesdropper: Outage and Intercept Probability Analysis. IEEE Access, 2023. DOI 10.1109/ACCESS.2023.3303369.
    (D1, IF 3.9)
  • Nguyen T., Tran D., Van ChT., Phan V., Nguyen NT., Vozňák M., Chatzionitas S., Ottersten B., Vincent PH.: Physical Layer Security
    in AF-Based Cooperative SWIPT Sensor Networks    . IEEE Sensors Journal, 2023. DOI 10.1109/JSEN.2022.3224128 (D1, IF 4.3)
  • Nguyen NT., Nguyen H., Nguyen N., Le A., Nguyen TN., Vozňák M.: Performance Analysis of NOMA-based Hybrid Satellite-Terrestrial Relay System Using mmWave Technology. IEEE Access, 2023. DOI 10.1109/ACCESS.2023.3238335. (D1, IF 3.9)
  • Rejfek L., Juryca K., Nguyen TNN., Beran L., Vozňák M.: Whitening Filters Application for Ionospheric Propagation Delay Extraction. 
    IEEE Transactions on Instrumentation and Measurement, 2023. DOI 10.1109/TIM.2023.3279464. (D1, IF 5.6)